New updates for PIrANHA, close to new release
New Gist on reasons to prefer CLI software vs. GUIs
Installing gbs2ploidy and its rjags dependency in R on CentOS Linux
First blogdown post
R install for user on a CentOS Linux supercomputer
dDocent install successes & failures on Linux supercomputers
Testing hypotheses of Panamanian frog & fish diversification - now out @ PeerJ Preprints
stdio.h file error during C/C++ software compilation on Mac
Command line trash: how to delete, trash, and inspect files from the CLI
How To Setup A Linux Supercomputer for RAD-seq
Analyzing ddRADseq Data in SNAPP
Running AMOVA (analysis of molecular variance) on biallelic SNP data in R
Getting BEAST2 Path Sampler analyses running on Windows 10
Data mining resources for species distribution modeling and macroecology
Setting DNA substitution models in BEAST
Automatically install or update all phylogenetics packages in R
How to kill an R process without forcing R to quit on mac
Latest *BEAST trace: Most beautiful thing I've seen today
Getting BEAST v1.8.3 running! Beagle, CUDA, Java, and LINUX
Dealing with negative phylogenetic branch lengths in BEAST starting trees
New version of BEAST--v1.8.3--released!
Update: BEAST v2.3.2 released!
Update to BEAST v2.3.1
Cochrane's Aphorism for Molecular Ecologists
Bagley's Law of Scientific Publication Access
Detecting trait-dependent shifts in DNA sequence evolution with traitRate
Coding general data types with ambiguities in BEAST input files
Stupid common names: Tigerfish
A funny thing about IMa2 output (a lost 2011 blog post)
Update: 'new' functions for generating starting trees for BEAST or *BEAST in R
Get the latest version of BEAST - v2.3.0 - then ask, "Do you need it?"
Update Mesquite with plugin for reading and writing NeXML format
Meeting opportunity: Dating species divergences using rocks and clocks
Update to latest version of BEAST2 - v2.2.1
New BEAST2 Tutorial that Rocks!
Alternative ways to quickly get post-burnin trees from BEAST output from the command line
Give your mac some relief: how to remove the sleepimage file using Terminal
Updated links to BEAST 1.7.5 phylogeography tutorials
Mesquite website down yesterday, today... and tomorrow?
New book on phylogenetic comparative analysis in R
Cool new paper on phylogenetic community diversity in Costa Rican ants
New web server update for Bayesian PTP species delimitation on single-locus gene trees - and more!
So you got a starting tree? How to add it to your BEAST2 xml file and make it work for you
Lower Central America phylogeography: review paper gets 100 views in 2 days on Academia.edu!
New version of Lamarc--Lamarc v2.1.9--now available!
New version of Tracer - Tracer v1.6 - now available!
Luke Mahler visits BYU
New Phyloseminar with Daniel Ksepka: adding fossil data to phylogenies
Where to outsource next-generation sequencing runs for de novo SNP discovery for phylogenetics and phylogeography
Bryan Carstens's phylogeography talk from the 2012 Molecular Ecology Symposium, 1st Joint Congress on Evolutionary Biology, Ottawa, Canada
Software Carpentry: providing training and open-access material for self-paced instruction in software skills for researchers
Tracy Heath visits BYU Biology dept ... and more
California freshwater fish distribution resources
BEASTGen: a new program for creating NEXUS, FASTA and BEAST XML input files for phylogenetics software
Symphony of Science - The Greatest Show on Earth! A music video about E...
A comprehensive list of phylogenetics packages for R
Do journal guidelines discouraging single-locus papers reflect an attitude that contributes to a "file-drawer problem" in phylogeography and phylogenetics?
Off to a good start: how to generate starting trees for BEAST analyses using R
SSH clients and Linux command line for interacting with supercomputers during evolutionary analysis
R functions for working with phylogenetic trees in packages ape, geiger, and caper: Part I
Statistical phylogeography tutorial #1: Coalescent simulations in Mesquite Part I
Migrate-N and phylogeography: Bayesian priors and run settings
DNA polymorphism indices and sampling
BEAST and the BEAST basics: molecular clocks and how to input rates into BEAST
Estimated cytb and RPS7 mutation rates for Heterandria
jmodeltest will not run with single quotes around tip names
New GARLI web server for runs in the cloud
Evolution, phylogenetics, and phylogenetic model selection: jmodeltest vs. DT_ModSel
In only so many words...
One way to evaluate incomplete lineage sorting in your phylogenetic or phylogeographic data
How to use MIGRATE-N for phylogeography
Phylogenetic hypothesis testing
Recent stuff - latest Micropterus sequences on GenBank