Phylogenetic hypothesis testing

I love going online and finding new websites with useful information. Here are a few recent websites related to evolutionary analysis using phylogenetic systematics, and particularly related to phylogenetic hypothesis testing.

• Mesquite documentation on Simulations & Randomization

  • http://mesquiteproject.wikispaces.com/Simulations+%26+Randomizations
    

• Brian O’Meara’s old phylogenetics tutorial page

  • http://www.brianomeara.info/tutorials/phylogenetics
    

• Andrew Crawford’s page - general

  • http://dna.ac/index.html
    

• Andrew Crawford’s SOWH test instructions

  • http://dna.ac/SOWH_detailed_guide.rtf
    

• Anderson, Goldman and Rodrigo’s SOWH test instructions

  • http://www.ebi.ac.uk/goldman/tests/SOWHinstr.html
    

• Hypotheses testing using randomizations and simulations in MESQUITE

  • Link
    

• Hyphy

  • http://www.datam0nk3y.org/hyphy/doku.php?id=start
    

~J